U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX7969014: GSM4429347: 201RS16; Brachypodium distachyon; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 12.4M spots, 1.9G bases, 806.9Mb downloads

Submitted by: NCBI (GEO)
Study: RNA-Seq profiling of ELF3 and PRR37 in Brachypodium Distachyon
show Abstracthide Abstract
Daylength is a key indicator of seasonal information that determines major patterns of behavior in plants and animals. Photoperiodism has been described in plants for about 100 years, but the underlying molecular mechanisms of daylength perception and signal transduction in many systems are not well understood. In trees, photoperiod perception plays a major role in growth cessation during the autumn as well as activating the resumption of shoot growth in the spring, both processes controlled by FLOWERING LOCUS T2 (FT2) expression levels and critical for the survival of perennial plants over winter. We find that night-length information is transmitted via the expression level of a poplar clock gene, LATE ELONGATED HYPOCOTYL 2 (LHY2), which controls FT2 expression. Repression of FT2 is a function of the night extension and LHY2 expression level. We show that LHY2 is necessary and sufficient to activate night-length repressive signaling. We propose that the photoperiodic control of shoot growth in poplar involves a balance between FT2 activating and repressing pathways. Overall design: Single samples were taken at each condition.
Sample: 201RS16
SAMN14426715 • SRS6355890 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Qiagen RNeasy Mini Kit (74104) was used to extract RNA. RNA quality and integrity were assessed on the Agilent 2200 TapeStation system. Library preparation was performed with 1µg total RNA using the NEBNext® Ultra™ Directional RNA Library Prep Kit for Illumina® (E7420L). The libraries were sequenced on a NextSeq500 (Illumina) running a final pooled library. Each pool contained 24 to 30 samples and was sequenced using NextSeq® 500/550 High Output Kit v2 (150 cycles) TG-160-2002 on a NextSeq500 (Illumina).
Experiment attributes:
GEO Accession: GSM4429347
Links:
Runs: 1 run, 12.4M spots, 1.9G bases, 806.9Mb
Run# of Spots# of BasesSizePublished
SRR1138988412,413,1681.9G806.9Mb2020-03-25

ID:
10404840

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...